cjbattey

driftR

population genetic simulations with R and Shiny

colordict

an R script for generating color combinations from Senzo Wada's "A Dictionary of Color Combinations"

LinckBattey2017_MAF_clustering

R scripts used in "Minor allele frequency thresholds strongly affect population structure inference with genomic datasets" (Linck & Battey 2017, doi: https://doi.org/10.1101/188623)

ldsim

An R/shiny simulation app for teaching linkage disequilibrium

popSim

population genetic simulations inspired by popG (http://evolution.gs.washington.edu/popgen/popg.html)

RADplots

Functions for plotting data generated by RAD sequencing - mostly dealing with the output from pyRAD

spacetree

tools for visualizing spatial genealogies

coalesceR

A native R simulator for the discrete coalescent

locator

Locator-- deep learning prediction of geographic location from individual genome sequences

halibut

ML classification of introgressed genomic regions using unphased genotypes (F1 from https://github.com/kern-lab/FILET)

popvae_analysis_scripts

scripts used for analyses and plotting described in the popvae manuscript

structure_parallel

R script to run multiple Structure analyses in parallel.

structurePlotter

a shiny site for plotting output from popgen Bayesian clustering software (STRUCTURE/Admixture/etc)

white_house_salaries

analyzing white house salary data

adaptR

An R app for wright-fisher simulations with time-variant genotype fitness

analysis

Analysis of inference methods on standard population models

anhu

demographic and climate niche analysis of range expansions in the Anna's Hummingbird

anolis

anolis_elevation_shift

scripts for analysis of elevation range shifts in Puerto Rican Anolis lizards

biol610

intro to programming for IE2 evolution students

ggforce

Accelerating ggplot2

migration_mapper

Making sweet gifs from eBird data

NBP

Seattle Audubon Society Neighborhood Bird Project

pdf2pdf

does the magical pdf-to-pdf conversion popular in academic journal submission sites

pyslim

Tools for dealing with tree sequences coming to and from SLiM.

selasphorus_evolution

STACKS_scripts

R and shell scripts for dealing with STACKS assemblies

truseq_assembly

pipeline for filtering and calling SNP's from illumina truseq libraries given an existing reference genome

UW_FISH340_fall2016

vcf2dadi

an R function to convert a vcf to dadi's input format (and maybe hzar)