cjayb

AIDE-api

API for the AIDE application

AIDE-front-end

The front end of the AIDE application

hnn-core

Simulation and optimization of neural circuits for MEG/EEG source estimates

mne-python

MNE : Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

AltaCV

Yet another alternative curriculum vitae/résumé class with LaTeX

beta_burst_layers

Analysis code for Bonaiuto, et al "Laminar dynamics of beta bursts in human motor cortex"

Broadsea

Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.

bycycle

Cycle-by-cycle analysis of neural oscillations.

coffeine

Covariance Data Frames for Predictive M/EEG Pipelines

CoSMoMVPA

A lightweight multivariate pattern analysis (MVPA) toolbox in Matlab / Octave

dotfiles

EEG

Repo for EEG paper

eyeloop

EyeLoop is a Python 3-based eye-tracker tailored specifically to dynamic, closed-loop experiments on consumer-grade hardware.

fooof

Parameterizing neural power spectra into periodic & aperiodic components.

Fruekilde_OCT_stall_quant_paper

Fruekilde et al. (in prepration)

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

hnn

The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.

hnn-core-examples

iCSD

Python-implementation of the inverse current source density (iCSD) methods from http://software.incf.org/software/csdplotter

LFPy

Python-module for calculation of extracellular potentials from multicompartment neuron models and networks

MLEP-public

Public repo for DeepLearning.AI MLEP Specialization

modern-unix

A collection of modern/faster/saner alternatives to common unix commands.

neurodsp

Digital signal processing for neural time series.

neuronaldynamics-exercises

Python exercises accompanying the book "Neuronal Dynamics"

neuropythy

A neuroscience library for Python, intended to complement the existing nibabel library.

OMOP-5.4-PostgreSQL

OMOP CDM 5.4 PostgreSQL Docker Image

sbi

Simulation-based inference in PyTorch

streamlit-fastapi-model-serving

Simple web app example serving a PyTorch model using streamlit and FastAPI

uncertainpy

Uncertainpy: a Python toolbox for uncertainty quantification and sensitivity analysis, tailored towards computational neuroscience.

xvfbwrapper

Manage headless displays with Xvfb (X virtual framebuffer)