Carolina Castaneda Garcia's repositories
articles
A repository for the source code, notebooks, data, files, and other assets used in the data science and machine learning articles on LearnDataSci
biofx_python
Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)
htslib
C library for high-throughput sequencing data formats
LCG_python
Notas de clase del modulo de python
melanoma_reseq
Resequencing leeds melanoma project
SigProfilerExtractor
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.