cihernand / iML1515_GP

GEM-PRO for the E. coli iML1515 metabolic model

iML1515_GP

GEM-PRO for the E. coli iML1515 metabolic model.

Instructions

Requirements

• Jupyter notebook installation and Python 3
• ssbio

Installing ssbio

pip install ssbio

Cloning

git clone https://github.com/SBRG/iML1515_GP

Opening

• Launch the notebook iML1515_GP - Loading and Exploring the GEM-PRO.ipynb from a Jupyter instance

Citation

Monk JM, Lloyd CJ, Brunk E, Mih N, Sastry A, King Z, Takeuchi R, Nomura W, Zhang Z, Mori H, Feist AM, Palsson BO. 2017. iML1515, a knowledgebase that computes Escherichia coli traits. Nat. Biotechnol. 35:904–908. http://dx.doi.org/10.1038/nbt.3956.