ChuYM's repositories
DeephageTP
DeephageTP: an alignment-free deep learning framework for identifying phage-specific proteins from metagenomic datasets
An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
biocode
Bioinformatics code libraries and scripts
CAT
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
CS224n-winter-together
an Open Course Platform for Stanford CS224n (2020 Winter)
DeepKingNet
A command line tool to classify nucleotide sequences as prokaryotic or eukaryotic.
DeepLearning-500-questions
深度学习500问，以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述，以帮助自己及有需要的读者。 全书分为18个章节，50余万字。由于水平有限，书中不妥之处恳请广大读者批评指正。 未完待续............ 如有意合作，联系scutjy2015@163.com 版权所有，违权必究 Tan 2018.06
EasyMetagenome
Easy Metagenome Pipeline 2019 (1.0)
fucking-algorithm
手把手撕LeetCode题目，扒各种算法套路的裤子。English version supported! Crack LeetCode, not only how, but also why.
genomes-pipeline
MGnify genome analysis pipeline
gintools
[Dev] Tools for genomic DNA integration analysis
GPD
This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"
Groningen-Microbiome
Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
lantern
Lantern官方版本下载 蓝灯 翻墙 代理 科学上网 外网 加速器 梯子 路由 lantern proxy vpn censorship-circumvention censorship gfw accelerator
learning-bioinformatics-at-home
resources for learning bioinformatics
Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
machine-learning-notes
My continuously updated Machine Learning, Probabilistic Models and Deep Learning notes and demos (2000+ slides) 我不间断更新的机器学习，概率模型和深度学习的讲义(2000+页)和视频链接
MAG_Snakemake_wf
Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
MGEfinder
A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
MGV_catalog
Supporting code for uncultivated gut virus manuscript
mismatch_crispri
Code for designing libraries of mismatch-modulated guide-RNAs for CRISPRi, and analyzing pooled-growth sample pairs generated using those libraries. Intended for use with: traeki/sgrna_design
pipeline-v5
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
sheng-xin-xiao-bai-yu
历史文档备份
Tools-Microbiome-Analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
ViralClust
Small pipeline to cluster viral genomes based on their k-mer content. WiP