chunfuxu

efficient-evolution

Efficient evolution from protein language models

EvoProtGrad

Directed evolution of proteins in sequence space with gradients

Are-u-ok

AF_Cluster

Predict multiple protein conformations using sequence clustering and AlphaFold2.

RoseTTAFold2NA

RoseTTAFold2 protein/nucleic acid complex prediction

dyMEAN

This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"

alphafold-multistate

RFdiffusion

Code for running RFdiffusion

OpenComplex

Trainable PyTorch framework for developing protein, RNA and complex models.

se3_diffusion

Implementation for SE(3) diffusion model with application to protein backbone generation

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

ColabDesign

Making Protein Design accessible to all via Google Colab!

Uni-Fold

alphafold

Open source code for AlphaFold.

ColabFold

Making Protein folding accessible to all!

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

mmterm

View proteins and trajectories in the terminal

trRosetta

A package to predict protein inter-residue geometries from sequence data

LocalAccuracyPredictor

Tensorflow/Python implementation of local accuracy predictor for proteins

rgn

Recurrent Geometric Networks for end-to-end differentiable learning of protein structure

homemade-machine-learning

🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained

TensorFlow-Examples

TensorFlow Tutorial and Examples for Beginners (support TF v1 & v2)