Cheng-Hung Tsai's repositories
dbcanlight
A lightweight rewrite of run_dbcan for better multithread performance
Autometa
Autometa: Automated Extraction of Genomes from Shotgun Metagenomes
bioconda-recipes
Conda recipes for the bioconda channel.
GEN220_2023_examples
Examples worked during class.
IDP_project
Intrinsic disordered proteins in fungi project in Stajich lab
meta-analysis
Meta-analysis of 16S/18S/ITS
plate_image_processing
Image processing for rhodotorula growth rate pictures
run_dbcan
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
smk-compartive_genomics
Comparative genomics analysis workflow for Xinzhan.
smk-metagenome
Snakemake workflow for Metagenomic assembly and binning
snakemake-tutorial
Variance calling pipeline for sars-cov-2 genomic RNA sequencing data (omicron & delta strains)
smk-genomeasm_nanopore
Snakemake pipeline for nanopore data
smk-template
Template repo for snakemake workflow.
smk_profile-slurm
Snakemake profile for stajichlab on UCR HPCC
viralVerify
viralVerify: viral contig verification tool