chrovis-genomon / genomon_pipeline_cloud

Software for executing genomon pipeline in cloud environments

genomon_pipeline_cloud

Installation

git clone https://github.com/Genomon-Project/genomon_pipeline_cloud.git
cd genomon_pipeline_cloud
python setup.py build install

External Prerequisites:

Install one of the following batch job engines:

• awsub
• ecsub (AWS only)
• azuremon (Micosoft Azure only)

Quick Start

export YOUR_BUCKET=s3://aokad-ana-tokyo

genomon_pipeline_cloud dna \
  example_conf/sample_dna.csv \
  ${YOUR_BUCKET}/genomon_pipeline_cloud_test \
  example_conf/param_dna_ecsub.cfg \
  --engine ecsub

see detail 📓 https://github.com/Genomon-Project/genomon_pipeline_cloud/wiki