Chris Wyatt's repositories
Bombus_impatiens
Repo of Bombus genome and toxicity exposure
chopgo
Chris Adaptation of Top go
configs
Config files used to define parameters specific to compute environments at different Institutions
Protein_blast_and_taxonomy
Nextflow pipeline to retrieve family level names for each protein
Eco-Flow.github.io
Eco-Flow webpage
genespace-nextflow
Nextflow wrapper for genespace
genomenote
This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics.
jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
jcvi_synteny
jcvi old copy
liftOver
Run liftover in gitpod
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Multispecies_paper_ML
Scripts used for Multispecies paper (Wyatt et al. Unpublished)
NCBI_genome_upload
A help repo for uploading a single genome
nf-training-public
Nextflow training material
nonmodel_genome
Basic data processing of a new non-model genome
rnaseq-nf
A proof of concept of RNAseq pipeline
silhouette
Make a png into various types of silhouette for scientific figures
test-datasets
Test data to be used for automated testing with the nf-core pipelines
website
Code and files for the main nf-core website.