Christine Liu's repositories
exonjunction
R script for visualizing exon-exon junctions in genomic sequencing reads
cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
Language:PythonBSD-3-Clause-Clear000
complex-upset
A library for creating complex UpSet plots with ggplot2 geoms
Language:RMIT000
isoSeQL
Database tool for comparing across many Iso-Seq runs analyzed through SQANTI3
Language:PythonGPL-3.0000
Language:RMIT000
somaticCNVpipeline
Pipeline for somatic CNV detection from single-cell whole-genome sequencing data of non-cancerous mouse or human tissue.
Language:PythonMIT000
SQANTI3
Repository of SQANTI3 tool for Quality Control of Long-Read Defined Transcriptomes
Language:HTMLGPL-3.0000
varccs
Variant Calling Tool for Circular Consensus Sequencing
Language:R000