Chris Probert's repositories
TF_chipseq_pipeline
AQUAS TF ChIP-seq pipeline
confocal-microscopy
CS231A course project on cell segmentation and description in confocal microscopy
freenome-build
Packaging and build tools.
GenomicMusic
Turning (epi)genomic data into sound representations (undergrad course project)
pwc-denoising
Examples of de-noising piecewise constant longitudinal signals
AffymeTricks
A prototype Python library for mining GEO data (undergrad class project)
bds_atac
ATAC-seq processing pipeline
caffe-tensorflow
Caffe models in TensorFlow
conda-forge-pinning-feedstock
A conda-smithy repository for conda-forge-pinning.
croo
Cromwell output organizer
flask-oauth
OAuth Support for Flask
genetools
python genetics/genomics utilities
genomelake
Simple and efficient access to genomic data for deep learning models.
libBigWig
A C library for handling bigWig files
LZSSE
LZ77/LZSS designed for SSE based decompression
pyclustering
pyclustring is a Python, C++ data mining library.
rappor
RAPPOR: Privacy-Preserving Reporting Algorithms
seq2seqtest
testing sequence to sequence models
sunburst-chart
A sunburst chart for viewing taxonomic data.
system-monitor
lightweight system monitor utility in Python targeting systems with multiple GPUs / CUDA app deployment
tflow-demo
TensorFlow data loading demo for CS273B
TileDB
TileDB official website
TileDB-Py
Python interface to the TileDB storage manager
variational-autoencoder
generate MNIST using a Variational Autoencoder