Christoph Hahn's repositories
maker-docker
Docker image as base for building full MAKER image
short-read-processing-and-assembly
A short introduction to processing and assembly of short (Illumina) NGS sequencing data
phylogenomics_intro_vertebrata
Phylogenomics tutorial based on BUSCO genes
docker-intro
A short introduction to using Docker in Bioinformatics
BioinformaticiansToolbox
Training materials for all things bioinformatics
Bioinformatics_cheat_sheets
Recipies for running some common bioinformatics software tools and workflows
guppy-docker
Ubuntu 20.04 with ONT's Guppy basecaller
longstitch-docker
Debian 10 with longstitch scaffolding pipeline
phylociraptor
rapid phylogenomic tree calculator
augustus-docker
Ubuntu 18.04 with Augustus and additional required software
cdhit-docker
Docker image for running cdhit in Ubuntu 18.04
course-test
Some description
docker-aws
aws cli in ubuntu
docker-megahit
Docker image based on Ubuntu 20.04 with megahit assembler
fastp-docker
fastp suite in Ubuntu 20.04
gpubootcamp
This repository consists for gpu bootcamp material for HPC and AI
R-SARTools-plus-docker
R 4.0.3 setup with SARTools plus necessary dependencies
raxml-ng-docker
Ubuntu 22.04 with raxml-ng
speciationgenomics.github.io
Repository for speciation genomics website
speciationgenomics_presentations
Presentations from the course
welldone-docker
A container setup for a docker exercise