Chris's repositories
InteractiveNetworks
Web tool for interactive gene network analysis and visualization.
InterpretContactMap
Deep learning methods for interpreting protein contact maps
neu-cs5800
Code for CS5800 that I teach at Northeastern University.
phospho_network
Regression Model Based on Prior Network Knowledge
Ratio-Distribution-Analysis-Demo
Software implementation for The Gene Balance Hypothesis: Dosage effects in plant
alphafold
Open source code for AlphaFold.
conversion_tools
A repository for demo collections
DeepGRN
Deep learning for modeling gene regulatory network
gitignore
A collection of useful .gitignore templates
GNET2_benchmark
Data and code for benchmark of GNET2
markdown_readme
Markdown - you can mark up titles, lists, tables, etc., in a much cleaner, readable and accurate way if you do it with HTML.
Numpy_and_MNIST_With_Convolution_networks
This is a simple demo for convolution neural networks with Numpy only on Python. The sample inputs are from MINST.
se3-transformer-public
code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503
Simple-Implementation-of-ML-Algorithms
My simplest implementations of common ML algorithms
viper_infer
Example scripts for VIPER inferences