This is the backbone service of eresearch repository platform. It integrates with external systems, collects --> aggregates based on a correlation id --> transforms and stores them in a document based database which in our case is MongoDB.
This service integrates with the following external systems:
- eresearch-author-matcher
- eresearch-dblp-consumer
- eresearch-scidir-consumer
- eresearch-author-finder
- eresearch-scopus-consumer
It consists of two workflows in order to collect and store the data.
repositorer-first-step-workflow.xml
repositorer-second-step-workflow.xml
Also it handles errors with the following workflows:
repositorer-error-handling-aggregators-workflow.xmlrepositorer-error-handling-workflow.xml
-
Dependencies
-
Infrastructure
- MongoDB
- ActiveMQ
-
Platform Services (Build docker images for the following services (detailed info on how to build docker image can be found on README.md of each one of the following described services))
-
-
How to init dependencies
- Execute:
docker-compose up - Execute:
docker-compose down
- Execute:
- Execute:
mvn clean test
Integration Tests (run docker-compose first, eresearch-author-matcher is the only needed from platform's services, all the others are mocked with WireMock)
- Execute:
mvn clean verify
-
Execute:
mvn clean install -DskipUTs=true -DskipITs=true -
Execute:
docker build -t chriniko/eresearch-repositorer:1.0 .in order to build docker image -
Fast:
mvn clean install -DskipUTs=true -DskipITs=true && docker build -t chriniko/eresearch-repositorer:1.0 .
- Execute:
docker-compose up - Execute:
mvn clean install -DskipUTs=true -DskipITs=true - Execute:
java -Dspring.profiles.active=dev -jar target/eresearch-repositorer-1.0-boot.jar - (Optional) Start: eresearch-repositorer-admin-portal with:
mvn tomcat7:run - (Optional) To shutdown:
docker-compose down
- Hitting with HTTP POST the endpoint:
http://localhost:8889/repositorer/extract
{
"firstname":"Anastasios",
"initials":"",
"surname":"Tsolakidis"
}{
"message": "Extraction fired."
}After Extraction, we hit MongoDB in order to see the contents of the just fired extraction (Records Resource)
- Hitting with HTTP GET the endpoint:
http://localhost:8889/repositorer/records/find-all
{
"retrievedRecordDtos": [
{
"filename": "RECORDAnastasios_NoValue_Tsolakidis#2019-04-18T20:25:14.619"
}
]
}
- Hitting with HTTP GET the endpoint:
http://localhost:8889/repositorer/records/find-all?full-fetch=true
{
"retrievedRecordDtos": [
{
"filename": "RECORDAnastasios_NoValue_Tsolakidis#2019-04-18T20:25:14.619",
"record": {
"id": "e9943aff-5810-474c-b9cf-5e0e6223ca6c",
"transactionId": "f414a76c-0edb-4da6-b45b-e7c7d5bf6c6a",
"firstname": "Anastasios",
"initials": "",
"lastname": "Tsolakidis",
"nameVariants": [
{
"firstname": "A.",
"initials": "",
"surname": "Tsolakidis"
},
{
"firstname": "A",
"initials": "",
"surname": "Tsolakidis"
}
],
"createdAt": "2019-04-18T17:25:14.619Z",
"entries": [
{
"title": "AcademIS: an ontology for representing academic activity and collaborations within HEIs.",
"authors": [
{
"firstname": "Evangelia",
"initials": null,
"surname": "Triperina"
},
{
"firstname": "Cleo",
"initials": null,
"surname": "Sgouropoulou"
},
{
"firstname": "Anastasios",
"initials": null,
"surname": "Tsolakidis"
}
],
"metadata": {
"Source": "DBLP",
"Dblp Author": "{\"authorName\":\"Anastasios Tsolakidis\",\"urlpt\":\"t/Tsolakidis:Anastasios\"}",
"Key": "conf/pci/TriperinaST13",
"Mdate": "2018-11-06",
"Publtype": null,
"Cdate": null,
"Authors": "[\"Evangelia Triperina\",\"Cleo Sgouropoulou\",\"Anastasios Tsolakidis\"]",
"Editors": null,
"Titles": "[\"AcademIS: an ontology for representing academic activity and collaborations within HEIs.\"]",
"Booktitles": "[\"Panhellenic Conference on Informatics\"]",
"Pages": "[\"264-271\"]",
"Years": "[\"2013\"]",
"Addresses": null,
"Journals": null,
"Volumes": null,
"Numbers": null,
"Months": null,
"Urls": "[\"db/conf/pci/pci2013.html#TriperinaST13\"]",
"Ees": "[\"https://doi.org/10.1145/2491845.2491884\"]",
"Cd roms": null,
"Cites": null,
"Publishers": null,
"Notes": null,
"Crossrefs": "[\"conf/pci/2013\"]",
"Isbns": null,
"Series": null,
"Schools": null,
"Chapters": null,
"Publnrs": null
}
},
{
"title": "PP-297. Factors that can affect birth type 10<ce:hsp sp=0.25></ce:hsp>years study",
"authors": [
{
"firstname": "Dimitrios",
"initials": null,
"surname": "Papadimitriou"
},
{
"firstname": "Athanasios",
"initials": null,
"surname": "Tsolakidis"
},
{
"firstname": "Hacer",
"initials": null,
"surname": "Hasan"
},
{
"firstname": "Anna",
"initials": null,
"surname": "Pantazi"
},
{
"firstname": "Eleni",
"initials": null,
"surname": "Karanikolaou"
}
],
"metadata": {
"Source": "Science Direct",
"Links": "[\"https://api.elsevier.com/content/article/pii/S0378378210005906\",\"https://www.sciencedirect.com/science/article/pii/S0378378210005906?dgcid=api_sd_search-api-endpoint\"]",
"Load Date": "2010-11-06T00:00:00Z",
"Prism Url": "https://api.elsevier.com/content/article/pii/S0378378210005906",
"Dc Identifier": "DOI:10.1016/j.earlhumdev.2010.09.353",
"Open Access": "false",
"Open Access Flag": null,
"Dc Title": "PP-297. Factors that can affect birth type 10<ce:hsp sp=0.25></ce:hsp>years study",
"Prism Publication Name": "Early Human Development",
"Prism Isbn": null,
"Prism Issn": null,
"Prism Volume": "86",
"Prism Issue Identifier": null,
"Prism Issue Name": null,
"Prism Edition": null,
"Prism Starting Page": "s134",
"Prism Ending Page": "s135",
"Prism Cover Date": "2010-11-30",
"Prism Cover Display Date": null,
"Dc Creator": "Anna Pantazi",
"Authors": "[{\"$\":\"Anna Pantazi\"},{\"$\":\"Hacer Hasan\"},{\"$\":\"Dimitrios Papadimitriou\"},{\"$\":\"Eleni Karanikolaou\"},{\"$\":\"Athanasios Tsolakidis\"}]",
"Prism Doi": "10.1016/j.earlhumdev.2010.09.353",
"Pii": "S0378378210005906",
"Pubtype": null,
"Prism Teaser": null,
"Dc Description": null,
"Author Keywords": null,
"Prism Aggregation Type": null,
"Prism Copyright": null,
"Scopus Id": null,
"Eid": null,
"Scopus Eid": null,
"Pubmed Id": null,
"Open Access Article": null,
"Open Archive Article": null,
"Open Access User License": null
}
},
.....-
Hitting with HTTP POST the endpoint:
http://localhost:8889/repositorer/records/find-by-filename?full-fetch=true- Payload:
{ "filename":"RECORDGrammati_NoValue_Pantziou#2019-04-18T21:44:50.218" }- Result:
{ "retrievedRecordDtos": [ { "filename": "RECORDGrammati_NoValue_Pantziou#2019-04-18T21:44:50.218", "record": { "id": "7df75fa8-b063-439f-bbf4-714909a346a5", "transactionId": "bd09a46a-9108-4102-8ef4-689ab53714a1", "firstname": "Grammati", "initials": "", "lastname": "Pantziou", "nameVariants": [ { "firstname": "G.", "initials": "", "surname": "Pantziou" }, { "firstname": "G", "initials": "", "surname": "Pantziou" } ], "createdAt": "2019-04-18T18:44:50.218Z", "entries": [ { "title": "Clustering in mobile ad hoc networks through neighborhood stability-based mobility prediction", "authors": [ { "firstname": "Charalampos", "initials": null, "surname": "Konstantopoulos" }, { "firstname": "Grammati", "initials": null, "surname": "Pantziou" }, { "firstname": "Damianos", "initials": null, "surname": "Gavalas" } ], "metadata": { "Source": "Science Direct", "Links": "[\"https://api.elsevier.com/content/article/pii/S1389128608000923\",\"https://www.sciencedirect.com/science/article/pii/S1389128608000923?dgcid=api_sd_search-api-endpoint\"]", "Load Date": "2008-03-16T00:00:00Z", "Prism Url": "https://api.elsevier.com/content/article/pii/S1389128608000923", "Dc Identifier": "DOI:10.1016/j.comnet.2008.01.018", "Open Access": "false", "Open Access Flag": null, "Dc Title": "Clustering in mobile ad hoc networks through neighborhood stability-based mobility prediction", "Prism Publication Name": "Computer Networks", "Prism Isbn": null, "Prism Issn": null, "Prism Volume": "52", "Prism Issue Identifier": null, "Prism Issue Name": null, "Prism Edition": null, "Prism Starting Page": "1797", "Prism Ending Page": "1824", "Prism Cover Date": "2008-06-26", "Prism Cover Display Date": null, "Dc Creator": "Charalampos Konstantopoulos", "Authors": "[{\"$\":\"Charalampos Konstantopoulos\"},{\"$\":\"Damianos Gavalas\"},{\"$\":\"Grammati Pantziou\"}]", "Prism Doi": "10.1016/j.comnet.2008.01.018", "Pii": "S1389128608000923", "Pubtype": null, "Prism Teaser": null, "Dc Description": null, "Author Keywords": null, "Prism Aggregation Type": null, "Prism Copyright": null, "Scopus Id": null, "Eid": null, "Scopus Eid": null, "Pubmed Id": null, "Open Access Article": null, "Open Archive Article": null, "Open Access User License": null } }, { "title": "Chapter 13: Design and management of vehicle-sharing systems: a survey of algorithmic approaches", "authors": [ { "firstname": "G.", "initials": null, "surname": "Pantziou" }, { "firstname": "C.", "initials": null, "surname": "Konstantopoulos" }, { "firstname": "D.", "initials": null, "surname": "Gavalas" } ], "metadata": { "Source": "Science Direct", "Links": "[\"https://api.elsevier.com/content/article/pii/B9780128034545000134\",\"https://www.sciencedirect.com/science/article/pii/B9780128034545000134?dgcid=api_sd_search-api-endpoint\"]", "Load Date": "2016-06-17T00:00:00Z", "Prism Url": "https://api.elsevier.com/content/article/pii/B9780128034545000134", "Dc Identifier": "DOI:10.1016/B978-0-12-803454-5.00013-4", "Open Access": "false", "Open Access Flag": null, "Dc Title": "Chapter 13: Design and management of vehicle-sharing systems: a survey of algorithmic approaches", "Prism Publication Name": "Smart Cities and Homes", "Prism Isbn": null, "Prism Issn": null, "Prism Volume": null, "Prism Issue Identifier": null, "Prism Issue Name": null, "Prism Edition": null, "Prism Starting Page": "261", "Prism Ending Page": "289", "Prism Cover Date": "2016-12-31", "Prism Cover Display Date": null, "Dc Creator": "D. Gavalas", "Authors": "[{\"$\":\"D. Gavalas\"},{\"$\":\"C. Konstantopoulos\"},{\"$\":\"G. Pantziou\"}]", "Prism Doi": "10.1016/B978-0-12-803454-5.00013-4", "Pii": "B9780128034545000134", "Pubtype": null, "Prism Teaser": null, "Dc Description": null, "Author Keywords": null, "Prism Aggregation Type": null, "Prism Copyright": null, "Scopus Id": null, "Eid": null, "Scopus Eid": null, "Pubmed Id": null, "Open Access Article": null, "Open Archive Article": null, "Open Access User License": null } }, .....
- Hitting with HTTP GET the endpoint:
http://localhost:8889/repositorer/error-reports/find-all?full-fetch=true
{
"retrievedErrorReportDtos": [
{
"filename": "ERROR_REPORT2019-04-18T15:38:34.281Z",
"errorReport": {
"id": "5cb04b8e-445e-4b9b-990d-2bd883d6387f",
"createdAt": "2019-04-18T15:38:34.281Z",
"exceptionToString": "com.eresearch.repositorer.exception.business.RepositorerBusinessException: Could not deserialize message.",
"repositorerError": "COULD_NOT_DESERIALIZE_MESSAGE",
"crashedComponentName": "com.eresearch.repositorer.transformer.results.sciencedirect.ScienceDirectResultsTransformer",
"errorStacktrace": "com.eresearch.repositorer.exception.business.RepositorerBusinessException: Could not deserialize message.\n\tat com.eresearch.repositorer.transformer.results.sciencedirect.ScienceDirectResultsTransformer.transform(ScienceDirectResultsTransformer.java:60)\n\tat sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\n\tat sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)\n\tat sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)\n\tat java.lang.reflect.Method.inv
...
- Hitting with HTTP GET the endpoint:
http://localhost:8889/repositorer/name-lookups/find-all
{
"nameLookups": [
{
"id": "5cb8b2e21cf6f43290dba9fe",
"transactionId": "f414a76c-0edb-4da6-b45b-e7c7d5bf6c6a",
"firstname": "Anastasios",
"initials": "",
"surname": "Tsolakidis",
"nameVariants": [
{
"firstname": "A.",
"initials": "",
"surname": "Tsolakidis"
},
{
"firstname": "A",
"initials": "",
"surname": "Tsolakidis"
}
],
"nameLookupStatus": "COMPLETED",
"createdAt": "2019-04-18T17:24:50.865Z"
}
]
}TODO