Choo Liu's repositories
colorado-public-data-list
a curated list of open/public data sources in Colorado.
colorado-environmental-records-scraper
tools for scraping & parsing Colorado Environmental Records HPRMWebDrawer (environmentalrecords.colorado.gov/HPRMWebDrawer).
ajrcmb_marijuana_rnaseq
Analysis code accompanying "Chronic marijuana use is associated with gene expression in bronchoalveolar lavage" (ATS Journals)
arjccm_marijuana_rnaseq
Chronic marijuana use is associated with gene expression in bronchoalveolar lavage
bead-normalization
bead-based normalization of mass cytometry data
FetalLung_miRNA_SmokeExposure
analysis code for "Intrauterine Smoke Exposure, microRNA Expression during Human Lung Development, and Childhood Asthma"
FSEoE_RNAseq
Analysis code accompanying "Fibrostenotic Eosinophilic Esophagitis phenotype is defined by a proliferative gene signature".
miRNASexDimorphismFetalLung
analysis code for "Sex-Specific Differences in MicroRNA Expression during Human Fetal Lung Development"
snm3Cseq_Pipeline
bioinformatics pipeline for single-nucleus methylation & chromatin conformation capture assay (sn-m3C-seq)
snmCTseq_Pipeline
Luo Lab snmCT-seq bioinformatics pipeline for joint single-nucleus methylation & transcriptome profiles.
Sterile_vs_Latent_TB_Immunity
Analysis code for "Comparative immune responses to Mycobacterium tuberculosis in individuals with latent infection or sterile protection against infection"
cemba_data
Mapping pipeline for snmC-seq based technologies.
coloradoRent
The rent is too damn high in Colorado
compas-analysis
Data and analysis for 'Machine Bias'
d4d-predicting-poverty
Poverty prediction based on research out of Stanford University in Collab with members of d4d
DLPC_Liver_RNASeq
Code associated with RNA-seq processing & data analysis of "LRH-1 Agonist DLPC Through STAT6 Promotes Macrophage Activation and Prevents Parenteral Nutrition Associated Cholestasis in Mice."
FastGxC
Computationally efficient and statistically powerful software for detecting context-specific eQTL effects in multi-context genomic studies.
igvf_seqspec_staging
staging before submitting Luo Lab/UCLA custom seqspecs for IGVF
read-this-first
Start here!
RZV_CMI_5YrPersist
Code for "Cell-Mediated Immune Responses After Administration Of The Live Or The Recombinant Zoster Vaccine: Five-Year Persistence."
seqspec
machine-readable file format for genomic library sequence and structure
town-council
Tools to scrape and centralize the text of meeting agendas & minutes from local city governments.