chlee-tabin's repositories
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
counterfactual_dim_reduction_sc
A novel dimension reduction based on Structural Causal Model (SCM)
Cho_Xi_Seqscope
Seqscope codes
insitu_probe_generator
Generate HCR-style Probe Pairs for mRNA visualization
RdPCA
Read-depth aware principal component analysis
presto
Fast Wilcoxon and auROC
seurat
R toolkit for single cell genomics
imageclipr
RStudio Addin: Copy Image from Clipboard into RMarkdown .Rmd file
dropEst
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
SingleR
SingleR: Single-cell RNA-seq cell types Recognition
tn_test
post-clustering differential expression test
MAGIC
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
indrops
Pipeline for processing inDrops sequencing data
celda
Bayesian Hierarchical Modeling for Clustering Single Cell RNA-Seq Data
ACME
This repository contains open-source C++ code for reconstructing membranes from time-lapse confocal/2-photon image data. Please refer to the webpage below for detailed instructions, precompiled binaries, and sample data for testing the code.