chlazaris

Charalampos Lazaris's starred repositories

alacritty

A cross-platform, OpenGL terminal emulator.

Language:RustApache-2.054990 451 5718

drawio-desktop

Official electron build of draw.io

Language:JavaScriptApache-2.048900 526 1433

awesome-zsh-plugins

A collection of ZSH frameworks, plugins, themes and tutorials.

Language:ShellBSD-3-Clause14967 182 54

xxHash

Extremely fast non-cryptographic hash algorithm

Language:CNOASSERTION8812 172 374

dotfiles

A set of vim, zsh, git, and tmux configuration files.

Language:ShellNOASSERTION7930 197 171

data-science-at-the-command-line

Data Science at the Command Line

Language:HTMLNOASSERTION3749 210 93

alacritty-theme

Collection of Alacritty color schemes

Apache-2.01882 16 16

oneliners

Useful bash one-liners for bioinformatics.

1823 156 10

RNA-seq-analysis

RNAseq analysis notes from Ming Tang

Language:PythonMIT859 78 7

see

:art: Visualisation toolbox for beautiful and publication-ready figures

Language:RNOASSERTION857 25 174

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

Language:TypeScript800 27 9

ggcharts

Get You to Your Desired Plot Faster

Language:RNOASSERTION290 16 57

brename

A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression

Language:GoMIT257 6 32

ssGSEA2.0

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

Language:RNOASSERTION228 13 31

ABC-Enhancer-Gene-Prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

Language:PythonMIT195 14 90

Genrich

Detecting sites of genomic enrichment

Language:CMIT184 10 110

dotfiles

Alacritty + Tmux + Oh My Zsh + Neovim = ❤️

Language:Lua168 6 1

SparK

Publication quality NGS track plotting

Language:Python102 5 16

nextflow-tutorial

Nextflow training material for introductory tutorial

Language:NextflowMIT99 40

rnaflow

A simple RNA-Seq differential gene expression pipeline using Nextflow

Language:HTMLGPL-3.091 4 146

website

Code and files for the main nf-core website.

Language:AstroMIT64 147 424

Data-Science-Curriculum

Data Science Curriculum for the non-technical

54 90

genepattern-notebook

Platform for integrating genomic analysis with Jupyter Notebooks.

Language:PythonBSD-3-Clause44 15 1

rose2

Language:PythonNOASSERTION1100

fastq_corrupt_check

Check a FASTQ file to see if it is corrupt

Language:PerlGPL-3.09 1 2

Nascent-Flow

Nascent Transcription Processing Pipeline

Language:NextflowMIT8 5 7

GCC-BOSC-2018

Lessons for "Setting up for Success when planning an RNA-seq experiment" session at GCC-BOSC 2018

Language:HTMLNOASSERTION5 5 2

users-meeting-2020-workshop

MIT200

peakCallingBenchmark

Repository for resources used to benchmark peak calling methods for ATAC-seq

Language:Nextflow100

data-science-at-the-command-line

Data Science at the Command Line

Language:HTMLNOASSERTION1 30