chienchi

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Los Alamos National Laboratory

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lanl

LANL-Bioinformatics

Chien-Chi Lo's repositories

amplicon_coverage_plot

interactive barplot for amplicon sequencing

Language:HTMLGPL-3.013 6 5

FaQCs

Language:PerlGPL-3.08 30

MUMmer

version 3.23

Language:C++NOASSERTION3 40

ramifi

Recombinant And Mixed-Infection Finder for SARS-CoV-2

Language:HTMLGPL-3.03 30

contigFilter

Language:PythonMIT1 30

EDGE

EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.

Language:PerlGPL-3.01 30

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell030

chienchi

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CppLearning

Language:C++000

cppLox

http://craftinginterpreters.com/ in Cpp

Language:C++06 12

dockstore-edge-covid19

Language:wdlGPL-3.0030

EpiCoV_downloader

Download all EpiCoV sequcnes from GISAID

Language:Python020

img-omics-wdl

Language:AMPL020

jupyter_nb

playground of jupyter notebook

Language:Jupyter Notebook030

kbase-centrifuge

Language:PythonMIT040

MetaComp

Language:R030

miccr

MInimap2 Contig ClassifieR

Language:PythonNOASSERTION000

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

MIT000

piret

Pythonic PiReT

Language:PythonBSD-3-Clause020

Scripts

A collection of python scripts used predominantly for analyzing genetic data.

Language:Python030

slate

Slate is theme for your GitHub Pages or Jekyll site. http://jasoncostello.github.io/slate

Language:CSSMIT030

stHello

streamlit training

Language:Python000

wait-for-it

Pure bash script to test and wait on the availability of a TCP host and port

Language:PythonMIT020

WorkflowPlanning

This is primarily a repo for capturing policies and discussions around the different workflows for NMDC. This is also used for project management related pieces.

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