chichi's repositories
assembly-annotation-pipeline
Plant genome assembly and annotation pipeline using snakemake
bio_tools
Useful bioinformatic scripts
Evolution
Code accompanying The Evolutionary history of 2,658 cancers
Finnish_eelgrass_milleniumClone
Somatic genetic drift and multi-level selection in modular species
Maxent
Maximum entropy modelling of species geographic distributions.
msprime
Simulate genealogical trees and genomic sequence data using population genetic models
neusomatic
NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
somatico
GATK 4 Mutect2 Somático