As you can check your Android partitions only in recovery mode this update.zip should help you.
The script is based on http://forum.xda-developers.com/showthread.php?t=2165870
Build the .zip file by zipping the META-INF folder up into FileSystemChecker.zip:
FileSystemChecker.zip
└─ META-INF
└─ com
└─ google
└─ android
└─ update-binary
- copy the .zip to your phones storage:
adb push - reboot into CWM recovery:
adb reboot recovery - run the script install command to execute:
FileSystemChecker.zip
Output should look like so:
Install from sdcard complete.
-- Installing: /storage/sdcard0/FileSytemChecker.zip
Finding update package...
I:Update location: /storage/sdcard0/FileSytemChecker.zip
Opening update package...
Installing update...
+ checking file system for /data:
device: /dev/block/mmcblk0p10
running e2fsck: /dev/block/mmcblk0p10: 21486/131072 files (9.0% non-contiguous), 405060/524288 blocks
+ checking file system for /system:
device: /dev/block/mmcblk0p9
running e2fsck: /dev/block/mmcblk0p9: 1736/32768 files (0.7% non-contiguous), 121493/131072 blocks
+ checking file system for /storage/sdcard0:
device: /dev/block/vold/259:3
running fsck_msdos:
** /dev/block/vold/259:3
** Phase 1 - Read FAT (compare skipped)
Attempting to allocate 11761 KB for FAT
** Phase 2 - Check Cluster Chains
** Phase 3 - Checking Directories
** Phase 4 - Checking for Lost Files
Lost cluster chain at cluster 48
1 Cluster(s) lost
Reconnect? yes
Next free cluster in FSInfo block (48) not free
Fix? yes
14337 files, 1770520 free (442630 clusters)
***** FILE SYSTEM WAS MODIFIED *****
+ checking file system for /storage/sdcard1:
device: /dev/block/vold/179:9
running fsck_msdos:
** /dev/block/vold/179:9
** Phase 1 - Read FAT (compare skipped)
Attempting to allocate 7480 KB for FAT
** Phase 2 - Check Cluster Chains
** Phase 3 - Checking Directories
** Phase 4 - Checking for Lost Files
5121 files, 3180448 free (198778 clusters)
Finished
Install from sdcard complete.