thread 'main' panicked at 'called `Result::unwrap()` on an `Err` value: stream did not contain valid UTF-8', src/main.rs:102:61

Question

thread 'main' panicked at 'called `Result::unwrap()` on an `Err` value: stream did not contain valid UTF-8', src/main.rs:102:61

subwaystation opened this issue 4 years ago · comments

Hi @chfi
Running

./target/release/gfaestus ~/Downloads/yeast/pggb_gfaestus/cerevisiae.pan.fa.pggb-W-s50000-l150000-p90-n5-a0-K16.seqwish-k8-B10000000.smooth-w30000-j5000-e5000-I0.7-p1_4_6_2_26_1.gfa ~/Downloads/yeast/pggb_gfaestus/cerevisiae.pan.fa.pggb-W-s50000-l150000-p90-n5-a0-K16.seqwish-k8-B10000000.smooth-w30000-j5000-e5000-I0.7-p1_4_6_2_26_1.chop.og.lay

I see

thread 'main' panicked at 'called `Result::unwrap()` on an `Err` value: stream did not contain valid UTF-8', src/main.rs:102:61

Link to the data. Will expire in 10 days.
http://fex.belwue.de/fop/LTIrSTM5/pggb_gfaestus_issue.zip

Thanks for any feedback!

Andrea Guarracino · Answer 1 · Mon Mar 01 2021 21:13:28 GMT+0800 (China Standard Time)

The input layout must be in TSV text format.

Simon Heumos · Answer 2 · Mon Mar 01 2021 21:17:37 GMT+0800 (China Standard Time)

Good to know, thanks!