Yi-Ting's repositories
MTBCPhyDyn
Phylodynamic simulations and inference of inter-species Mycobacterium spp transmission
PartII_Hendra
SIR model for Hendra virus circulation in eastern Australian flying-fox species (P. alecto, P. poliocephalus). Incorporates an annual seasonal birth pulse function as described by Peel et al., 2014. Data visualisation functions included.
bcs
Simulates the behaviour of systems written in the Beacon Calculus.
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chickenrun
Part III project
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CSD3_BEAST2_ARRAY
Bash script for running job array on CSD3 for multiple BEAST2 runs
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ionide-vscode-fsharp
VS Code plugin for F# development
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oneliners
Useful bash one-liners for bioinformatics.
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Scripts-for-outbreak-simulations
A series of scripts that were used to simulate outbreaks and compare models' estimates for these outbreaks
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