cxianger's repositories
Captain-ACHAB
Analysis Converter for Human who might Abhor Bioinformatics. A simple and useful interface to analysis of WES data for molecular diagnosis
CDPI
Towards a Universal Approach for Predicting Variant Pathogenicity in Diverse Disease Landscapes
cola
A General Framework for Consensus Partitioning
deeplearning.ppi
A deep learning framework for improving protein interaction prediction using sequence properties
downloadSRA
Download an SRA file when the ID has been given
EnrichedHeatmap
make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
gtrellis
Genomic plot in trellis layout
hyperopt
Distributed Asynchronous Hyperparameter Optimization in Python
Identify_gCNV_with_WES
Analysis workflow to assess germline copy number variants from human whole-exome sequencing
iGMDR-1
an integrative database for investigating genetic model of drug response in cancer
In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
MAESTRO
Single-cell Transcriptome and Regulome Analysis Pipeline.
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
MPA
MoBiDiC Priorization Algorithm
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
NGS
Scripts for next generation sequencing
plink2merlin
Command Line Python Utility to convert from plink format to Abecasis Lab's QTDT format (used by Merlin).
PlotCNV
An R package to create a pretty Copy Number Variant plot from a segments file
proxy_pool
Python爬虫代理IP池(proxy pool)
scikit-learn
scikit-learn: machine learning in Python
scMCA
Mouse cell atlas
scRNA-seq_notes
A list of scRNA-seq analysis tools
SequencEnG
An interactive learning resource for next-generation sequencing (NGS) techniques
simplifyGO
Simplify GO enrichment results
TCGAbiolinks
TCGAbiolinks
trackViewer
A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
tutorials
Python tutorials and examples
vcf_anno
A VCF annotation tool/prototype with ExAC API