Ken Chen (陈恳)'s repositories
SpliceBERT
Primary RNA sequence model
SpliceBERT-analysis
Additional analysis on SpliceBERT
biock
Scripts for bioinformatics
Language:PythonBSD-3-Clause000
BSD-3-Clause000
Language:PythonMIT000
CAGI6-Sherloc-model
Model for CAGI6-Sherloc challenge (rank the 1st)
Language:PythonMIT000
docker-4dn-hic
Docker for 4DN Hi-C processing pipeline
Language:Common Workflow LanguageMIT000
FLASH-pytorch
Implementation of the Transformer variant proposed in "Transformer Quality in Linear Time"
Language:PythonMIT000
PredPSI-SVR
Predicting alternative splicing change caused by genetic mutations
Language:CNOASSERTION000
scBasset.pytorch
Unofficial implementation of scBasset
Language:PythonApache-2.0000
selene
a framework for training sequence-level deep learning networks
Language:Jupyter NotebookBSD-3-Clause-Clear000
SpliSER
Bioinformatic tool for Splice site Strength Estimation using RNA-seq
Language:Python000
sysu-graduate-thesis
Sun Yat-sen University Graduate Thesis Template for School of Computer and Engineering (based on https://github.com/tuna/thuthesis)
Language:TeXLPPL-1.3c000
seq2cell
Sequence-based cell type embedding
Language:PythonMIT000