chenh1gis's repositories
fratools
PERL scripts for managing genotype array data.
GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
PAMM
Mapping mutation is a probabilistic approach to infer possible evolutionary histories of the observed data (Nielsen 2002). It offers a powerful approach studying the pattern of substitution on a phylogenetic tree. The specific version implemented here is designed to analyze large amount of sequence data in a flexible fashion. The major highlights of the programs are: 1) The ability to handle large amount of sequence data (e.g. Influenza sequences). 2) A flexible approach to investigate the mutational pattern (especially adaptive evolution) over different combinations of branches and sites.
plinkQC
R package for quality control of plink genetic datasets
rmarkdown-book
R Markdown: The Definitive Guide (published by Chapman & Hall/CRC in July 2018)