chengdai's repositories
earth_virome_pipeline
Pipeline for the detection and isolation of viral reads from metagenomic data
translator-bigquery-api
This is the API for the translator biqquery project
bioconda-recipes
Conda recipes for the bioconda channel.
EdwardsLab
Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edwards' bioinformatics lab at SDSU.
gestation_multiomics
An reanalysis of Ghaemi et al (2018, Bioinformatics) using a simpler Elastic Net model and further statistical analysis to identify batch effect and outliers
spraw_expenditure
Beyond Density: Municipal Expenditures and the Shape and Location of Development
flashpca
Fast Principal Component Analysis of Large-Scale Genome-Wide Data
NCBI_taxonomy_tree
NCBI taxonomy tree in-memory mapping
openheatmap
A web renderer for geographic heat maps, using OpenStreetMap compatible file formats
qiime2_processing
Running QIIME2/DADA2 on a set of sample
ristretto
Randomized Dimension Reduction Library
statrethinking_winter2019
Statistical Rethinking course at MPI-EVA from Dec 2018 through Feb 2019
StrainSifter
A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).