Chan Zuckerberg Initiative's repositories
redis-memo
A Redis-based version addressable caching system. Memoize pure functions, aggregated database queries, and 3rd party API calls.
scRNA-python-workshop
All the action is on the course webpage -->
cellxgene-documentation
Documentation for the cellxgene product
terraform-provider-bless
Terraform provider to automate the creation of BLESS deployments
software-mention-extraction
Software mention extraction and linking from scientific articles
scoreboard
minimalist web app for comparing algorithm performance on benchmark data
full-text-mining-ner
Open Source Code for Extraction of Methods and Datasets from Biomedical Papers
shasta-docs
[DEPRECATED] Shasta github.io repo for user guides, etc.
ncbi-tool-cliclient
CLI client for NCBI data tool
ncbi-tool-sync
Sync component for NCBI data tool
shasta-docker
[DEPRECATED] This repository contains the code and configuration required to create Docker images for Shasta on different platforms.
ncbi-tool-search
Collection of script-style utility functions for the NT/NR search mapping research.
amundsen
Amundsen is a metadata driven application for improving the productivity of data analysts, data scientists and engineers when interacting with data.
czge-test-data
data for czge integration tests
docker-base
Docker image build for nextstrain/base
meta-kg-api-documentation
Documentation for the Meta KG API
ncbi-tool-server
Server component for NCBI data tool
ncbitax2lin
Convert NCBI taxonomy dump into lineages
ncov-ingest
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
Ontomatcher
General purpose, configurable, fast entity mention detection package.
science-workshop
An active development space for learning, sharing, and iteration.
terraform-aws-managed-service-grafana
Terraform module which creates AWS Managed Service for Grafana (AMG) resources 🇺🇦