chage's repositories
single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
idep
Integrated Differential Expression and Pathway analysis
workflowr
Organize your project into a research website
dsbook
Repository for data science book
RNA-seq-analysis
RNAseq analysis notes from Ming Tang
awesome-multi-omics
List of software packages for multi-omics analysis
awesome-deep-learning-papers
The most cited deep learning papers
csvtk
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
sunbeam
A robust, extensible metagenomics pipeline
biotools
A list of useful bioinformatics resources
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.