Casey Greene's repositories
awesome-advisors
Academic (Masters', PhD, Postdoc) advisors with explicitly stated expectations of themselves and their mentees
Mastodon-Bioinformatics
Most simple webapp to bulk follow bioinformatics accounts on Mastodon.
action-pylint
A GitHub action that checks Python code using black, safety and flake8.
CellBench_data
This contains the dataset for comparing scRNA-seq analysis methods
cimr
tool for continuously integrated meta-resource
cimr-d
client to the cimr-d database for continuous integration and analysis using cimr
covid19-review
A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19
deep-rules
Ten Simple Rules for Deep Learning in Biology
focalscan
FocalScan: Finding altered genes in cancer based on coordinated DNA & RNA change
greenelab.com
The website source code for greenelab.com
issue-labeler
An action for automatically labelling issues
medullo-classifier-package
R package for Medulloblastoma subtype classification
meta-review
Manuscript describing the Deep Review Collaborative Workflow and Manubot System
mymanuscript
Demo manuscript using Manubot
nbrun
Automate execution of Jupyter Notebooks from another Notebook.
OpenPBTA-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
OpenPBTA-manuscript
The manuscript repository for the Open Pediatric Brain Tumor Atlas Project
phase-1-hnscc-trial-prediction
Create and evaluate exploratory prediction model for phase 1 HNSCC clinical trial.
psb-manuscript
Manuscript source for the People of the Pacific Symposium on Biocomputing
refinebio
Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.
rootstock
Clone me to create your Manubot manuscript
ScPCA-manuscript
The manuscript repository for the Single-cell Pediatric Cancer Atlas (ScPCA)
software-impact-hackathon-2023
A repo to curate information for, and projects resulting from the October 2023 Software Impact Hackathon
waysciencelab.com
Homepage for all happenings in the Way Lab at CU Anschutz
xswap-manuscript
Manuscript on XSwap network permutation and hetnet node degrees