cgpu

staries

The *ies. A series of <star>-ies util snippets, scripts or templates that I use day to day.

action-custom-action

Custom action creation example

add-branch-protection-rules

Programmatically add branch protection rules using gh cli

action-hadolint

Run hadolint with reviewdog 🐶

awesome-hugo-themes

cgpu

demo-nf

demo-nf-2

demo-nf-nf

demo-test

exomiser-test-nf

frankenspammer

A stampede of processes at your fingertips

hello-github-actions

homenearthetube

JiraPython

Long-Read-Proteogenomics

A workflow for Delineating the Human Proteome at Isoform Resolution by Integration of Long-read Proteogenomics and Mass Spectrometry.

new-repo

nextflow

Nextflow pipelines

nextflow-pipeline

patterns

A curated collection of Nextflow implementation patterns -- http://nextflow-io.github.io/patterns/index.html

R_vs_excel_workshop

repository-mirroring-action

A GitHub Action for mirroring a repository to another repository

rnatoy

A proof of concept RNA-Seq pipeline with Nextflow

slackapps-repository

splicing-pipelines-nf

Repository for the Anczukow-Lab splicing pipeline

template-nf

templates

A library for generating template files

test-action-cloudos-cli

Github action to programmatically launch Lifebit CloudOS jobs using the official API client cloudos-cli

test-exomiser-nf

test_stage_lustre

mini pipeline to test staging performance on lustre