cfarkas

cfarkas's repositories

A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes

Language:NextflowMIT25 2 3

Analysis of SARS-CoV-2 genome variants collected with freebayes variant caller

Language:ShellMIT8 1 4

Computational analysis to discover germline variants in illumina NGS data from SARS-CoV-2

Language:ShellGPL-3.04 10

Obtaining case-associated variants and correspondent genes (from control/case experiments) in BASH/R enviroment

Language:RGPL-3.01 10

Analisis of Skin Cancer MNIST: HAM10000 dataset using state-of-the-art deep learning methods

Language:Jupyter NotebookMIT010

FEELnc : FlExible Extraction of LncRNA

Language:PerlGPL-3.0000

Genome Annotation Without Nightmares

Language:Perl000

A pipeline for collecting and visualize NGS variants from genetically engineered mouse models

Language:R010

GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools

Language:PerlGPL-3.0000

A DSL for data-driven computational pipelines

Language:GroovyApache-2.0000

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Language:DockerfileBSD-3-Clause010

Analysis of SALL2 isoform specific ChIP-seq data

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Shell script compiler

Language:CGPL-3.0000

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

LGPL-3.0000