cerner / bunsen

Explore, transform, and analyze FHIR data with Apache Spark

https://engineering.cerner.com/bunsen

cerner/bunsen Issues

[Question] Why is R4 support disabled on latest version (0.5.6)?
Updated 2 years ago1
Is the Bunsen Python API still maintained? Issues with bunsen Python API (bunsen v 0.5.11) and pyspark v. 3.2.1
Updated 2 years ago
Unable to extract QuestionnaireResponse resource from bundle
Updated 3 years ago1
ID fields of converted Avro records are not expected to be fully qualified URLs.
Updated 3 years ago1
Issues while trying to query on Observation resource
Updated 3 years ago2
release 0.4.9 missing
Updated 3 years ago
SparkRowConverter for ImagingStudy will throw NPE on DSTU3
Updated 3 years ago
Log a proper error message when a valueset entry in a valuesets bundle doesn't contain version element
Updated 4 years ago
There is a vulnerability in spark 2.4.4,upgrade recommended
Updated 4 years ago
Certain schemas do not have a default value
Closed 4 years ago
modifierExtension element is missing in the generated Avro schema
Closed 4 years ago
"Meta" element not updated in Avro and Spark converters.
Closed 4 years ago1
Support FHIR Extensions in Spark Datasets
Updated 4 years ago4
SparkRowConverter.forResource seems to not be thread-safe based on intermittent NullPointerException in cluster mode
Closed 4 years ago
Travis CI build failure
Closed 4 years ago
BroadcastableValueSets threading issue
Closed 4 years ago1
Primitive Types with maximum cardinality is not supported
Closed 4 years ago
Extension type element is not generated correctly with specified maximum cardinality of "*"
Closed 4 years ago
[0.5.0-Dev] type cast exception while converting from hapi object to avro specific record
Closed 4 years ago1
[0.5.0-Dev] Avro Schema generation for fields of "Element" type are not expanded
Closed 4 years ago1
[0.5.0-dev] support contained resources
Closed 4 years ago1
MultiValue & Containers clashing with Type Restrictions
Closed 4 years ago
Support Null Codes in String Conversions
Closed 4 years ago
[0.5.0-dev] Spark Row schema skips recursively nested elements
Closed 4 years ago
IdType Should Apply Converter
Closed 4 years ago
Schema generation fails for extension elements of certain types
Closed 4 years ago
[0.5.0-dev] Bundles extractEntry java api to support contained resources
Closed 4 years ago1
Unable to Read from Standalone Resources
Updated 4 years ago
Support oid data types in resources (Eg STU3 - ImagingStudy)
Updated 4 years ago
[0.5.0-Dev] Avro Schema generation for fields with identical ChoiceTypes fails
Closed 5 years ago1
Writes Fail due to Column Mismatch
Updated 5 years ago5
Write resources to a database - saveAsTable/chmod / Operation not permitted
Updated 5 years ago
Uplift for Spark 2.4.0
Closed 5 years ago3
Bump PySpark
Closed 5 years ago
Clean Encoder.of API to Support Unambiguous Parameters
Closed 5 years ago
Support for Contained Resources
Closed 5 years ago
Uplift for Spark 2.3.2
Closed 5 years ago
Broadcast of BroadcastableConceptMaps Fails to Find Latest
Closed 6 years ago
ValueSets add_values method fails
Closed 6 years ago
push_valuesets should take an instance of ValueSest
Updated 6 years ago1
InValueSet UDF Should Apply to Arrays of CodeableConcept
Closed 6 years ago
ValueSetUdfs Should Accept Already-Broadcast Instance
Closed 6 years ago
latest_version Broken
Closed 6 years ago1
add_mappings Broken and Missing Parameter
Closed 6 years ago1
Remove Objects Code
Updated 6 years ago
Create Docker Image
Closed 6 years ago1
Simplify APIs for tutorial usage
Updated 6 years ago
FHIR R4 Support
Closed 6 years ago2
Spark 2.3 Support
Closed 6 years ago2
Support FHIR profiles to use only used elements
Updated 6 years ago1