cednotsed

iORD_hepatitis

vertebrate_host_jumps

test_repo

ncbi_biosample_xml_parser

bat-CoVs

blood_microbial_signatures

ditto

Investigating patterns of SARS-CoV-2 host adaptation

SARS-CoV-2-hookup

A table for linking up the nucleotide transitions on the SARS-CoV-2 genome with their corresponding amino acid positions and changes. I've also included the associated table comprising the Wuhan-Hu-1 gene coordinates (https://www.ncbi.nlm.nih.gov/nuccore/1798174254), and the script used to generate the hookup table.

tcell_cross_reactivity_covid

BIOC0023_dissertation

BIOC0021

BIOC0021: Advanced Investigative projects in molecular biosciences (Literature projects) 2020-21

nucleotide_to_AA_parser

Biopython script for converting SNPs of a multiple genome sequence alignment to an annotated list of amino acid changes.

TB-Bedaquiline-Resistance-Modelling

Using XGBoost to model M. tuberculosis resistance to Bedaquiline based on amino acid information

Polymicrobial-Signature-of-Sepsis

mink_homoplasies

covid_homoplasy_2

genome_homopolymer_counter

A script for producing a tsv file which tells you the start, end position of homopolymer runs in a fasta reference.