celloutline
(De/re)construct cell segmentation outlines in 3D.
celloutline works with 3D binary segmentations, nominally of stem cells as produced by the Allen Institute, to change representation and reduce dimensionality of sets of such segmentations.
Installation instructions
Currently not available through pip, install locally for symlinked updates with git pulls via:
git clone https://github.com/AllenCellModeling/celloutline.git
pip install -e .
Using docker
Docker file can be built and run with make
make build
make run