cduvallet's repositories
microbiomeHD
Cross-disease comparison of case-control gut microbiome studies
q2-perc-norm
QIIME2 plugin for percentile normalization to correct for batch effects in microbiome case-control studies
cduvallet.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
aspiration-analysis-public
Public repo associated with Duvallet et al (2018) aerodigestive microbiome paper
match_hmdb
Search for mass-matches between a feature table with mz's and all HMDB metabolites
phd-thesis
Repo with my MIT thesis (non-forked version, to allow for LFS)
phdchat-philosophies
#PhDChat for the Alm lab summit: philosophies on coding and data for comp PhD students
evolution_game
Game to teach concepts about mutation, diversity, selection, and evolution
concat_datasets
Scripts to concatenate multiple datasets and process them together, for use with population estimation project
donor-selection
Exploring donor selection approaches for FMT trials
mbiome-data-viz
Presentation for Cornell microbiome data hackathon (April 2019)
ms2_predict
Predict chemical class from MS2 data
q2-feature-table
QIIME 2 plugin supporting operations on feature tables.
q2-sample-classifier
QIIME 2 plugin for machine learning prediction of sample data.
research-parasite-editorial
GigaScience editorial for the Research Parasite award
sewage-variability
Temporal and geographic variability of 16S and metabolomics from residential sewage
sourcingboston
A Food Security and Resilience Hackathon