cdiener

tcgar

R package to read TCGA data and connect it to analysis pipelines (e.g. bioconductor).

cobra-docker

Dockerfile to build a single user jupter notebook server running cobrapy and additional tools for flux-based modeling.

dycone

Analyze enzyme regulation with metabolome data.

govitae

Render JSON résumés with Go.

architeuthis

Tools to analyze and summarize data for Kraken2.

cobrapy

COBRApy is a package for constraint-based modeling of biological networks

hugo-page

A personal web site built with HUGO.

amazon-sagemaker-examples

Example notebooks that show how to apply machine learning, deep learning and reinforcement learning in Amazon SageMaker

arduino

Source code and materials for Arduino projects. Nothing fancy, I'm just learning.

bioconda-recipes

Conda recipes for the bioconda channel.

biom-format

The Biological Observation Matrix (BIOM) Format Project

cdiener

Repo for the profile page.

cobra-feedstock

A conda-smithy repository for cobra.

conda-forge-pinning-feedstock

A conda-smithy repository for conda-forge-pinning.

coptr

Accurate and robust inference of microbial growth dynamics from metagenomic sequencing

Creative-Commons-Markdown

Markdown-formatted Creative Commons licenses

embl_gems

EMBL GEMs: A collection of GEnome-scale Models for bacterial species

gopractice

Several small Golang practice programs. Mostly inspired by CS50.

Microbiome-conferences-c

This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.

nxviz

Visualization Package for NetworkX

OpenCL-Wrapper

An OpenCL C++ wrapper to facilitate OpenCL implementation

optlang

optlang - sympy based mathematical programming language

pokemon_app

Esqueleto para un simple servicio que predice que Pokemon gana en una pelea.

q2cli

Command line interface for QIIME 2

SCFA_predictions

slimm

Species Level Identification of Microbes from Metagenomes

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

swiglpk

Simple swig bindings for the GNU Linear Programming Kit

swiglpk-feedstock

A conda-smithy repository for swiglpk.

symengine_numba_issue

Tests whether the symengine <-> numba conflict is still there.