cdeboever3

deboever-sf3b1-2015

Code for reproducing SF3B1 study.

cdpipelines

Analysis pipelines.

cdpybio

Various bioinformatics scripts that don't need their own repositories.

CSE280a_winter2012

Project for CSE280a, winter 2012

sj2psi

Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores

TCGA-1

Forked version of the code for theandygross's paper so I can use some of the processing code.

2018-03-06-stanford

2018-03-29-stanford-git

Resources for the Git portion of the 2018-03-29-stanford Software Carpentry workshop.

CancerData

cdeboever3.github.io

Personal website.

dotfiles

dotvim

Vimconfig files

figshare

Command line client for figshare

GeneticsDesign

Forked from a GitHub copy of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/GeneticsDesign.html

goshifter

GoShifter

gtex_comparison

Comparison of transcriptome quantification methods for GTEX samples.

guitar-chord-quizzer

A simple command line guitar chord quizzer.

postdoc-planning

A collection of (hopefully useful) information for planning a post doc

pptmut

Research project.

pyencodetools

Python wrapper for ENCODE (Encyclopedia of DNA Elements) API and tools for working with the data.

svm-bpfinder

A tool for mammalian U2 branch point prediction.

swc-stanford-20180329

WASP

WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery

wrangling-genomics

Lesson for wrangling genomics data