ChongChul Chai's repositories
gpu-jupyter
Leverage the flexibility of Jupyterlab through the power of your NVIDIA GPU to run your code from Tensorflow and Pytorch in collaborative notebooks on the GPU.
alphafold
Open source code for AlphaFold.
alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
avogadro
Avogadro 1 is not under active development, the repository was archived in September 2021. Development of Avogadro 2 is being done at https://github.com/openchemistry/avogadrolibs. Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
biopython
Official git repository for Biopython (originally converted from CVS)
book
The Rust Programming Language
cmder
Lovely console emulator package for Windows
deepchem
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
google-research
Google Research
gpusimilarity
A Cuda/Thrust implementation of fingerprint similarity searching
gromacs
Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/gromacs/gromacs for code review and issue tracking.
handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
m1-machine-learning-test
Code for testing various M1 Chip benchmarks with TensorFlow.
moses
Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models
NetPEA
Re-implementation of Network-Based Pathway Enrichment Analysis
pymol-open-source
Open-source foundation of the user-sponsored PyMOL molecular visualization system.
Q3
Mathematica application to help study quantum information processing, quantum many-body systems, and quantum spin systems.
qiskit-optimization
Quantum Optimization
QuantumWorkbook
A compilation of the Mathematica(R) Notebook files that have been used to generate the demonstrations in "A Quantum Computation Workbook".
ray
An open source framework that provides a simple, universal API for building distributed applications. Ray is packaged with RLlib, a scalable reinforcement learning library, and Tune, a scalable hyperparameter tuning library.
RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
tensorflow-nlp-tutorial
tensorflow를 사용하여 텍스트 전처리부터, Topic Models, BERT, GPT와 같은 최신 모델의 다운스트림 태스크들을 정리한 Deep Learning NLP 저장소입니다.