cboursnell

crb-blast

Conditional Reciprocal Best Blast

transfuse

Merge transcriptome assemblies

SOAPdenovo-Trans

A fork of SOAPdenovo-Trans

transrate-tools

Reading bam files and aggregating read mapping information about sequences

preprocess

Ruby Gem for running preprocessing on Illumina sequence data

i3install

scripts and configs for installing i3 in a fresh ubuntu17.04

betterbam

BAM file parsing for Ruby using C++ Bamtools library

fix-trinity-output

Fix Trinity fastq output

assemblotron

Automated optimisation of de-novo transcriptome assembly

bindeps

Binary dependency management for Ruby

carpel

Bayesian segmentation Ruby gem

cboursnell.github.io

Randomiser for Dominion cards

clustemble

A preparation for nucleotide sequence consensus in transfuse

deconstructSigs

deconstructSigs

dominiontabs

Divider generator for the card game Dominion and its expansions.

dotfiles

A collection of config files for Crunchbang Linux

fixpairing

Simple tool to fix paired fastq files

gridss-purple-linx

Standalone GRIDSS/PURPLE/LINX pipeline

magicwildrice

petdba

Paired End Transcriptomic De Bruijn graph assembler

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

RapClust

Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes

Rcorrector

Error correction for Illumina RNA-seq reads

ruby-drawille

Draw in your terminal with Unicode Braille characters.

ruby_c_ext_test

Test of writing a C extension for Ruby

snap

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

transfix-paper

Paper and analysis for transfix: improving your transcriptome assembly

transonerate

Ruby gem for assessment of assembly quality by aligning to a genome with exonerate

transrate

Quality assessment and comparison of transcriptome assemblies

transrate-paper

Paper for transrate