Cole's repositories
gene-oracle-docker
Gene Oracle dockerized, for running across Kubernertes.
kinc-k8s-demo
A demo/workshop for using a series of applications to create a Kubernetes cluster and run a genomics workflow.
fdt-docker
Dockerfile for Fast Data Transfer Tool: https://fast-data-transfer.github.io/
ndn-tools-docker
Dockerized tools for Named Data Networking: https://github.com/susmit85/ndn-tools
nextflow-stress-test
Dummy pipeline to shorten debug time for more complex pipelines.
POWER8-GEM
An adaptation of the PBS-GEM for use with IBM's POWER8 architecture.
builderdash
Builderdash is a cross cloud build system for cloud images
DCBLAST
Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools
DriverRewardsMobile
Driver Rewards App
GEMmaker
A NextFlow workflow for converting a set of SRA files to a set of Gene Expression Vectors (GEV)
hicn-genomics
Compiled, organized, and documented scripts/tools for pulling and publishing data via hICN. Included is a biodata case study focused around 3000+ indexed genomes.
KINC-nf
Nextflow pipeline for KINC
kinc-nf-demo
KINC-NF demo for Kubernetes
Mini-DFA
Mini-DFA that produces data flow analysis for MIPS instructions.
Nextflow-KINC
***WORK IN PROGRESS*** Will be a KINC as a Nextflow workflow.
palmetto-log-notebook
Notebook for analyzing Palmetto GPU logs.
s3
Minimal Amazon S3 Client Docker Container
SimpleCPU
A simple CPU simulator.
slate-catalog
SLATE application catalog based on Helm
slurmflow
A collection of Docker containers for setting up a Slurm-based cluster, configured to run Nextflow workflows.
sriov-network-device-plugin
SRIOV network device plugin for Kubernetes
Threaded-Merge-Sort-C
A threaded merge sort program coded in C.
TigerOptimizer
A script that pulls grade distributions from Clemson's Tiger Grader for easy schedule optimization!