caspargross

Bash-Oneliner

A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.

aho-corasick

A fast implementation of Aho-Corasick in Rust.

diff-pdf

A simple tool for visually comparing two PDF files

screen-pipe

Library to build personalized AI powered by what you've seen, said, or heard. Works with Ollama. Alternative to Rewind.ai. Open. Secure. You own your data. Rust.

long-read-pipelines

Long read production pipelines

tigerbeetle

The financial transactions database designed for mission critical safety and performance.

u8g2

U8glib library for monochrome displays, version 2

dokku

A docker-powered PaaS that helps you build and manage the lifecycle of applications

piku

The tiniest PaaS you've ever seen. Piku allows you to do git push deployments to your own servers.

jekyll-theme-chirpy

A minimal, responsive, and feature-rich Jekyll theme for technical writing.

herro

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

quickdna

Fast DNA manipulation for Rust and Python

zoxide

A smarter cd command. Supports all major shells.

TRexs

TRGT Repeat expansion summary

marker

Convert PDF to markdown quickly with high accuracy

CHM13

The complete sequence of a human genome

BeetsPluginStructuredComments

Monitorian

A Windows desktop tool to adjust the brightness of multiple monitors with ease

dipcall

Reference-based variant calling pipeline for a pair of phased haplotype assemblies

smudgeplot

Inference of ploidy and heterozygosity structure using whole genome sequencing data

NanoRepeat

NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

umon

minimal host monitoring

NanoSim

Nanopore sequence read simulator

galai

Model API for GALACTICA

sill

Gesture-based text editor (and shell) for the reMarkable tablet

Spectre

Copy number caller for long read data including SNV utilization

pure-bash-bible

📖 A collection of pure bash alternatives to external processes.

metaMDBG

MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.

khoj

Your AI second brain. Get answers to your questions, whether they be online or in your own notes. Use online AI models (e.g gpt4) or private, local LLMs (e.g llama3). Self-host locally or use our cloud instance. Access from Obsidian, Emacs, Desktop app, Web or Whatsapp.

clmystery

A command-line murder mystery