caravagn

evoverse.datasets

Datasets and analysis results released with the REVOLVER package for Cancer Evolution.

GDA

Genome Data Analytics (DSSC 2021)

revolver.misc

Data released with the REVOLVER package, example vignettes and case studies.

Bootstrap-based-Learning

Bootstrap-based Learning

evoverse

The evoverse is a package to implement cancer evolution analysis on multi-sample cancer sequecing data.

cancer_bioinformatics

Cancer Bioinformatics training session for the Evolutionary Biology and Ecology of Cancer school, Wellcome Trust 2022.

CompBio2022

CompBio Classes DSSC 2022

mtree

Mutation tree from binary bulk sequencing data

pio

Pretty I/O output to the console

GBM-Stat-testing

Statistical testing for GBM Margin/ Primary tumours

GP-correction-maps

Matching models across abstraction levels with Gaussian Processes.

GP-Heterogenous-SIR

mobster_supp_data

Supplementary Data released with Caravagna et al. Subclonal reconstruction of tumors by using machine learning and population genetics. Nature Genetics volume 52, 898–907(2020).

programming_utils_c

C utilities for the programming classes at units.

SEMM_2020

Slides and code for the SEMM Advanced Bioinformatics Workshop (October 2020)

test_c_classrom