caosgc33d

virusfusion

detect virus integration sites in host genome

VirusScan

VirusScan Pipeline

10Xmapping

mapping somatic variants to each individual cell based on scRNA-Seq data

commonscripts

commonly used scripts

dailybox

germlinewrapper

detect germline variants from normal samples

hotspotrc

Hotspot mutation readcount

misplice

Discover Mutation Induced Splice Sites

neoscan

predict neoantigen for indel and snvs

somaticwrapper

Detect somatic variants from tumor and normal exome data

machinelearning

Algorithm for machine learning

mgidaily

Dockerfile for mgi

misplice_gcloud

mix

mixing scripts

multiplex-imaging-pipeline

A pipeline for multiplex imaging analysis

neoflow

NeoFlow is a standalone tool developed based on Nextflow and Docker and is developed for tumor neoantigens identification using DNA-Seq, RNA-Seq and MS/MS data.

PANOPLY

Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)

wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly