caojiabao's repositories
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
PhageRBPdetection
Detection of phage RBPs based on protein domains and machine learning
deep-learning-for-image-processing
deep learning for image processing including classification and object-detection etc.
biomagician
Useful tools in microbiomics and metagenomics
poretools
a toolkit for working with Oxford nanopore data
Text-Classification-LSTMs-PyTorch
The aim of this repository is to show a baseline model for text classification by implementing a LSTM-based model coded in PyTorch. In order to provide a better understanding of the model, it will be used a Tweets dataset provided by Kaggle.
Chinese-Text-Classification-PyTorch
中文文本分类任务，基于PyTorch实现（TextCNN，TextRNN，FastText，TextRCNN，BiLSTM_Attention, DPCNN, Transformer，Bert，ERNIE），开箱即用！
setup-ipsec-vpn
Scripts to build your own IPsec VPN server, with IPsec/L2TP, Cisco IPsec and IKEv2
awesome-nanopore
A curated list of awesome nanopore analysis tools.
BacteriophageHostPrediction
Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"
nlp-notebooks
A collection of notebooks for Natural Language Processing from NLP Town
python_for_data_analysis_2nd_chinese_version
《利用Python进行数据分析·第2版》
MetBrewer
Color palette package in R inspired by works at the Metropolitan Museum of Art in New York
ggtreeExtra
:lemon: Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
viralFlye
viralFlye pipeline
gggenomes
A grammar of graphics for comparative genomics
machinelearning
My blogs and code for machine learning. http://cnblogs.com/pinard
MGV
Supporting code for uncultivated gut virus manuscript
CoverM
Read coverage calculator for metagenomics
clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
FEAST
Fast expectation maximization for microbial source tracking
vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Python-100-Days
Python - 100天从新手到大师
AF-classification
The repo is for the Heart Disease classification project using Transformer Encoders in PyTorch.
kallisto
Near-optimal RNA-Seq quantification
alibaba_tianchi_book
阿里云天池大赛赛题解析
METEORE
Automatic DNA methylation detection from nanopore tools and their consensus model