cao-ben's repositories
antibioticsai
Supporting code for the paper "Discovery of a structural class of antibiotics with explainable deep learning"
BLEEP
Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
chemprop
Message Passing Neural Networks for Molecule Property Prediction
clash-for-linux
Linux 端使用 Clash 作为代理工具
deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
deepdistilling
Mechanistically interpretable neurosymbolic AI (Nature Comput Sci 2024): losslessly compressing NNs to computer code and discovering new algorithms which generalize out-of-distribution and outperform human-designed algorithms
DNA-Storage-Transform
Single Read Reconstruction for DNA Data Storage Using Transformers (official implementation)
DSI-QG
The official repository for "Bridging the Gap Between Indexing and Retrieval for Differentiable Search Index with Query Generation", Shengyao Zhuang, Houxing Ren, Linjun Shou, Jian Pei, Ming Gong, Guido Zuccon and Daxin Jiang.
genslm
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
GNNome-assembly
Learning to untangle genome assembly with graph neural networks.
HE2RNA_code
Train a model to predict gene expression from histology slides.
histocartography
A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
KMVO-algorithm
This program is the source code in our paper, KMVO Algorithm to Construct DNA Storage Codes
lt-codes-python
Fountain Code: Efficient Python Implementation of LT Codes
ncNet
ncNet, a Transformer-based model for supporting NL2VIS.
PEKS
Implementation of Public Key Encryption with Keyword Search
pykan
Kolmogorov Arnold Networks
python-wheels
Prebuilt python wheels.
rfamgen
Code repository of "Deep generative design of RNA family sequences"
RNA-GAN
Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods
scButterfly
A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders
scButterfly_source
Source codes for the reproduction of scButterfly
seqrequester
A tool for summarizing, extracting, generating and modifying DNA sequences.
zfec
zfec -- an efficient, portable erasure coding tool