cao-ben

cao-ben

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cao-ben's repositories

antibioticsai

Supporting code for the paper "Discovery of a structural class of antibiotics with explainable deep learning"

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BLEEP

Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning

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chemprop

Message Passing Neural Networks for Molecule Property Prediction

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clash-for-linux

Linux 端使用 Clash 作为代理工具

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deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

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deepdistilling

Mechanistically interpretable neurosymbolic AI (Nature Comput Sci 2024): losslessly compressing NNs to computer code and discovering new algorithms which generalize out-of-distribution and outperform human-designed algorithms

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DNA-Storage-Transform

Single Read Reconstruction for DNA Data Storage Using Transformers (official implementation)

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DSI-QG

The official repository for "Bridging the Gap Between Indexing and Retrieval for Differentiable Search Index with Query Generation", Shengyao Zhuang, Houxing Ren, Linjun Shou, Jian Pei, Ming Gong, Guido Zuccon and Daxin Jiang.

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genslm

GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics

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GNNome-assembly

Learning to untangle genome assembly with graph neural networks.

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HE2RNA_code

Train a model to predict gene expression from histology slides.

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histocartography

A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

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KMVO-algorithm

This program is the source code in our paper, KMVO Algorithm to Construct DNA Storage Codes

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lt-codes-python

Fountain Code: Efficient Python Implementation of LT Codes

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ncNet

ncNet, a Transformer-based model for supporting NL2VIS.

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PEKS

Implementation of Public Key Encryption with Keyword Search

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pykan

Kolmogorov Arnold Networks

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python-wheels

Prebuilt python wheels.

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rfamgen

Code repository of "Deep generative design of RNA family sequences"

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RNA-GAN

Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods

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scButterfly

A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders

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scButterfly_source

Source codes for the reproduction of scButterfly

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seqrequester

A tool for summarizing, extracting, generating and modifying DNA sequences.

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zfec

zfec -- an efficient, portable erasure coding tool

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