Cameron Lloyd's repositories
oct-to-tiff
A command line tool for converting optical coherence tomography angiography (OCTA) data.
angiotool
A trial to convert AngioTool ( https://ccrod.cancer.gov/confluence/display/ROB2/Home ) into a Fiji plugin
bioformats2raw
Bio-Formats whole slide imaging to raw format converter
crabz
Like pigz, but rust
deepimagej-plugin
The ImageJ plugin to run deep-learning models
example-imagej-command-kotlin
An ImageJ command that mixes Kotlin and Java code
gzp
Multi-threaded Compression
homebrew-cask
🍻 A CLI workflow for the administration of macOS applications distributed as binaries
ImageJ
Public domain software for processing and analyzing scientific images – a.k.a. ImageJ 1.x
imagej-common
ImageJ core data model
imagej-launcher
The ImageJ native launcher
imagej-legacy
Backwards compatibility with ImageJ 1.x
imagej.github.io
GitHub Pages for ImageJ
imagej2
:sparkler: Open scientific N-dimensional image processing :microscope:
ISIC-Archive-Downloader
A script to download the ISIC Archive of lesion images
license-maven-plugin
Maven plugin to download and collect license files from project dependencies.
Lighting
Control LIFX lights from your Mac via a Notification Center Widget
list-of-update-sites
The update sites ImageJ knows about automatically
Macmoji
Slack/GitHub/Trello emoji for your mac! 😁 💥 💻
Mask_RCNN
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
medical-imaging-datasets
A list of Medical imaging datasets.
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
multi-package-containers
Testing building mulled containers for multi-requirement tools.
napari
napari: a fast, interactive, multi-dimensional image viewer for python
OCT-Converter
Extract the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.
qupath
QuPath - Open Source Digital Pathology
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
tifffile
Read and write TIFF files. Forked from https://pypi.org/project/tifffile
website
Code and files for the main nf-core website.