camillescott

cppyy-knn

An example repo for packaging cppyy bindings for a simple k-nearest neighbors implementation, based on https://github.com/jclay/cppyy-knearestneighbors-example

tabs

2015-fish-dna

Simple genome assembly of an African cichlid

explotiv

nbflow

A tool that supports one-button reproducible workflows with the Jupyter Notebook and Scons.

similarity-matrix

for ashanti, or anyone who needs to make a quick similarity matrix out of a FASTA file

2015-petMarSB

assembly-graphs

barf

drop-in bioinformatics validation

bioconda-recipes

Conda recipes for the bioconda channel.

conda-build

Commands and tools for building conda packages

crb-blast

Conditional Reciprocal Best Blast

D3-ncbi-taxonomy

fishpoo

A study of gut microbial communities of Tanganyikan cichlids

harmony

A responsive Jekyll theme.

MMETSP

re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project

openscad-designs

Designs for things!

paper

My pandoc-based project skeleton.

pipecleaner

EVE Online app for nullsec access points

plotille

Plot in the terminal using braille dots.

profile

prometheus-cpp

Prometheus Client Library for Modern C++

pycon-tutorial-project

pydoit-intermediate

pyinseq

Python pipeline for analyzing INSeq Insertion Sequencing data

sourmash

Compute and compare MinHash signatures for DNA data sets.

SRApy

SRA python tools

streaming-cdbg-pub

SuchTree

A Python library for fast, thread-safe computations on phylogenetic trees

ucd-ecs253