caMicroscope

caMicroscope

Digital pathology image viewer with support for human/machine generated annotations and markups.

GSOC

Self-Contained Project Ideas from caMicroscope (Ideal for GSoC or small grants)

Distro

Docker distribution of camicroscope and all its components

Caracal

Conslidated Backend, Auth, and Security Services for caMicroscope

tfjs-models

Sample Models for use with caMicroscope

camicroscope.github.io

caMicroscope organization page

SlideLoader

Tool for loading slide metadata for caMicroscope

oss-lite

BFBridge

Bioformats Bridge

docs

Documentation for caMicroscope

iipImage

Containerized IIP

ImageLoader

APIs for loading whole slide images onto caMicroscope.

ImageLoader.py

Python utility that also does image loading. Used for large scale image loading where images are already available and all that is needed is to extract and store the metadata.

rbac-admin

rbac admin portal

ViewerDockerContainer

Dockerfile for caMicroscope viewer. Includes Apache, PHP, IIPSrv and caMicroscope.

.github

Repository for Community Support Documents

3dPrintedMicroscope

Special code for using caMicroscope live with a 3d printed microscope

bindaas

Dockerfile for bindaas

DataDockerContainer

Dockerfile for the Data layer of caMicroscope. Installs Mongo, Bindaas and mounts appropriate directories from the file system.

dicomsrv

caMicroscope DICOM server (Orthanc) build scripts

DynamicServices

eaglescope

Hierarchical and Cohort Visualization

FlexTables

Tabular browsing of hierarchical REST APIs

image-decoders

LoaderDockerContainer

Dockerfile for loader docker container. Includes uAIMLoader and ImageLoader.

Nanoborb

OrderingService

Ordering service for camicroscope. Used by Dynamic Services etc.

orthanc-indexer

Orthanc indexer plugin fork with caMicroscope patches

security-router-v2

Security, user authentication and landing page for caMicroscope

uAIMDataLoader

API for loading Markups for caMicroscope.