Cameron Martino 's repositories
acetate-alcohol
Acetate reprograms gut microbiota during alcohol consumption
deicode-benchmarking
deicode benchmarking repo
hartig-net
repo of blog style tutorials (some under construction), hopefully it creates some nice symbiosis
longitudinal-ibd
Analyses for Guiding longitudinal sampling in IBD cohorts
TesasSemble
Assemble in the 4th dimension
BISB-Bootcamp-2020
FA2020 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
BISB-Bootcamp-2021
FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
DEICODE
Robust Aitchison PCA from sparse count data
deicode-feedstock
A conda-smithy repository for deicode.
funwalk
A two-state system of diffusion models dimorphic fungal morphogenesis and mycelial growth.
gemelli-benchmarking
punchline is in the name
HS-bacteria-COVID19
Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity
phylo-rclr-benchmarking
benchmarks for phylorclr
qurro
Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
seeding-study
Restoration of the microbiome trajectory by vaginal seeding of C-section born infants
sourcetracker2
SourceTracker2
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
tenatch
compositional tensor decomposition
TesasSemble-benchmarking
benchmarking for project
the-sourdough-framework
Open source book dedicated to helping you to make the best possible sourdough bread at home.
version-testing-fastp-minimap2
version-testing for fastp-minimap2