cadmuxe / biovis

BioVis Contest 2013

Fixing TIM

BioVis Contest 2013

3-D renderer switch to Pymol from PyMOL.

Demo

• IEEE BioVis 2013 Main Tool Example
• IEEE BioVis 2013 3D Motion Example
• IEEE BioVis 2013 Interactive Trend Image Example

Dependence

• Pymol 1.6
• PySide
• PyOpenGL
• MySQLdb

System Requirements

Ubuntu 12.04 and up

If using either Macintosh or Windows:

• Download Virtual Box (https://www.virtualbox.org/), or any equivalent piece of software (Parallels Desktop, VMWare, etc.)
• Download Ubuntu Desktop (http://www.ubuntu.com/download), making sure it is version 12.04 or newer
• Follow the instructions (https://www.virtualbox.org/manual/ch02.html) to setup the virtual machine

Installation

• Download the code by either:

  • git clone https://github.com/cadmuxe/biovis .
  • Downloading the zip: https://github.com/cadmuxe/biovis/archive/master.zip

• From Ubuntu, launch a terminal window

• Execute the following commands in the terminal window (copy and paste):

  • sudo apt-get update
  • sudo apt-get install build-essential python2.7 freeglut3 libgl1-mesa-glx libglu1-mesa python-tk python-pmw python-pip python2.7-dev python-pyside mysql-client python-mysqldb pymol cmake qt4-default python-qt4* git
  • sudo pip install --upgrade pip
  • sudo pip install numpy pyopengl

• change to the fixingTIM directory and run: python ./qt.py